Variant report

Variant	rs73025925
Chromosome Location	chr3:157844333-157844334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs16828806	1.00[AMR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs6762923	1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6782027	1.00[AMR][1000 genomes]
rs6809280	1.00[EUR][1000 genomes]
rs73021840	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs73025951	1.00[EUR][1000 genomes]
rs73027918	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7613737	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641797	1.00[AMR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9840759	1.00[EUR][1000 genomes]
rs9858864	1.00[EUR][1000 genomes]
rs9869501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872495	1.00[EUR][1000 genomes]
rs9873074	1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9882507	1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157828600-157845800	Weak transcription	Spleen	Spleen
2	chr3:157828600-157847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:157828600-157857000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:157828800-157847600	Weak transcription	NH-A	brain
5	chr3:157828800-157851000	Weak transcription	Right Ventricle	heart
6	chr3:157829000-157849400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:157829200-157845400	Weak transcription	HMEC	breast
8	chr3:157829200-157861400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:157830000-157866400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:157830400-157845000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:157831800-157845800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:157833200-157856200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:157835400-157845800	Weak transcription	Lung	lung
14	chr3:157835600-157846000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:157835800-157844400	Weak transcription	HUVEC	blood vessel
16	chr3:157836000-157851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:157836400-157849400	Weak transcription	NHLF	lung
18	chr3:157836600-157854600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:157836800-157847400	Weak transcription	Colonic Mucosa	Colon
20	chr3:157837600-157845800	Weak transcription	Esophagus	oesophagus
21	chr3:157837600-157877600	Weak transcription	Fetal Heart	heart
22	chr3:157838800-157862600	Weak transcription	Pancreas	Pancrea
23	chr3:157839800-157845200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:157839800-157845400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:157839800-157845600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:157840000-157850200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:157840200-157856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:157840400-157844800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:157840600-157844400	Strong transcription	Fetal Lung	lung
30	chr3:157840600-157846200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:157840600-157846800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:157840600-157846800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:157840600-157846800	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:157840800-157844400	Strong transcription	Adipose Nuclei	Adipose
35	chr3:157840800-157844600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:157840800-157844600	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr3:157840800-157844800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr3:157840800-157845200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:157840800-157845400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:157840800-157845600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:157840800-157845600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:157840800-157856200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr3:157841000-157848000	Strong transcription	Liver	Liver
44	chr3:157841000-157848200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:157841200-157844600	Strong transcription	Stomach Smooth Muscle	stomach
46	chr3:157841200-157845600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr3:157841200-157847000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr3:157841200-157850000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr3:157841400-157845800	Weak transcription	Gastric	stomach
50	chr3:157841400-157848200	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links