Variant report

Variant	rs9858864
Chromosome Location	chr3:157864764-157864765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157863466..157866461-chr3:157886047..157887794,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13322986	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs6441190	1.00[EUR][1000 genomes]
rs6762923	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6776674	1.00[EUR][1000 genomes]
rs6784612	1.00[EUR][1000 genomes]
rs6784707	1.00[EUR][1000 genomes]
rs6787212	1.00[EUR][1000 genomes]
rs6809280	1.00[EUR][1000 genomes]
rs73013336	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs73025951	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73027918	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7613737	1.00[EUR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9824822	1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9840759	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9861869	1.00[EUR][1000 genomes]
rs9869501	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872495	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872642	1.00[EUR][1000 genomes]
rs9873074	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9882507	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157830000-157866400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:157837600-157877600	Weak transcription	Fetal Heart	heart
3	chr3:157843000-157868600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:157843600-157866200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:157843600-157886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:157846000-157868400	Weak transcription	Lung	lung
7	chr3:157846000-157869200	Weak transcription	Esophagus	oesophagus
8	chr3:157846200-157869200	Weak transcription	Psoas Muscle	Psoas
9	chr3:157846200-157869200	Weak transcription	NHEK	skin
10	chr3:157846200-157872000	Weak transcription	Primary T cells from cord blood	blood
11	chr3:157846200-157875200	Weak transcription	Gastric	stomach
12	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
14	chr3:157846600-157867400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:157846600-157878600	Weak transcription	HSMM	muscle
16	chr3:157846800-157866200	Weak transcription	Brain Angular Gyrus	brain
17	chr3:157846800-157874000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:157846800-157874600	Weak transcription	Fetal Lung	lung
19	chr3:157846800-157876800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:157846800-157876800	Weak transcription	K562	blood
21	chr3:157846800-157894400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:157847000-157868600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:157847000-157873200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:157847200-157876800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:157847800-157869400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:157848000-157869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:157848000-157888200	Weak transcription	Thymus	Thymus
28	chr3:157848200-157867200	Weak transcription	Primary B cells from cord blood	blood
29	chr3:157848200-157876200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:157848200-157886800	Weak transcription	Ovary	ovary
31	chr3:157848400-157870200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:157848800-157872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:157849400-157894400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:157850200-157872600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:157850600-157886400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr3:157852000-157872800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:157854600-157911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:157856000-157869000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:157856200-157877000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:157856200-157894400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:157856400-157869400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:157856400-157872600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:157856400-157872600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:157856400-157873600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:157856400-157877000	Weak transcription	A549	lung
46	chr3:157856400-157878600	Weak transcription	Hela-S3	cervix
47	chr3:157856400-157879600	Weak transcription	Adipose Nuclei	Adipose
48	chr3:157856400-157885400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr3:157856400-157892400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:157858200-157869000	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links