Variant report

Variant	rs73021877
Chromosome Location	chr3:157667069-157667070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11916913	1.00[EUR][1000 genomes]
rs11919793	1.00[EUR][1000 genomes]
rs11921038	1.00[EUR][1000 genomes]
rs13314233	1.00[EUR][1000 genomes]
rs13327394	1.00[EUR][1000 genomes]
rs1515469	1.00[EUR][1000 genomes]
rs58062483	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6809280	1.00[EUR][1000 genomes]
rs73021840	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs73025951	1.00[EUR][1000 genomes]
rs9809461	1.00[EUR][1000 genomes]
rs9825478	1.00[EUR][1000 genomes]
rs9830519	1.00[EUR][1000 genomes]
rs9831137	1.00[EUR][1000 genomes]
rs9838427	1.00[EUR][1000 genomes]
rs9840759	1.00[EUR][1000 genomes]
rs9858864	1.00[EUR][1000 genomes]
rs9864058	1.00[EUR][1000 genomes]
rs9865305	1.00[EUR][1000 genomes]
rs9871830	1.00[EUR][1000 genomes]
rs9872495	1.00[EUR][1000 genomes]
rs9872671	1.00[EUR][1000 genomes]
rs9881977	1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv877688	chr3:157567963-157815380	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157666600-157667200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:157666800-157667200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:157666800-157667200	Active TSS	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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