Variant report

Variant	rs73021840
Chromosome Location	chr3:157632371-157632372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11916913	1.00[EUR][1000 genomes]
rs11919793	1.00[EUR][1000 genomes]
rs11921038	1.00[EUR][1000 genomes]
rs13314233	1.00[EUR][1000 genomes]
rs13327394	1.00[EUR][1000 genomes]
rs1515469	1.00[EUR][1000 genomes]
rs58062483	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73021877	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs9809461	1.00[EUR][1000 genomes]
rs9825478	1.00[EUR][1000 genomes]
rs9830519	1.00[EUR][1000 genomes]
rs9831137	1.00[EUR][1000 genomes]
rs9838427	1.00[EUR][1000 genomes]
rs9840759	1.00[EUR][1000 genomes]
rs9864058	1.00[EUR][1000 genomes]
rs9865305	1.00[EUR][1000 genomes]
rs9871830	1.00[EUR][1000 genomes]
rs9872495	1.00[EUR][1000 genomes]
rs9872671	1.00[EUR][1000 genomes]
rs9881977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv877688	chr3:157567963-157815380	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157630600-157635000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:157630800-157632600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:157630800-157632600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:157631000-157633000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:157631000-157634200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:157631200-157632400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:157631400-157632600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:157631400-157635200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157631600-157635600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:157632000-157632600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:157632200-157633200	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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