Variant report

Variant	rs9825478
Chromosome Location	chr3:157587121-157587122
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11916913	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11919793	1.00[EUR][1000 genomes]
rs11921038	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13314233	1.00[EUR][1000 genomes]
rs13327394	1.00[EUR][1000 genomes]
rs1515469	1.00[EUR][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs73021840	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs9809461	1.00[EUR][1000 genomes]
rs9830519	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9831137	1.00[EUR][1000 genomes]
rs9838427	1.00[EUR][1000 genomes]
rs9864058	1.00[EUR][1000 genomes]
rs9865305	1.00[EUR][1000 genomes]
rs9871830	1.00[EUR][1000 genomes]
rs9872671	1.00[EUR][1000 genomes]
rs9881977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv877688	chr3:157567963-157815380	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157576400-157590400	Weak transcription	Right Atrium	heart
2	chr3:157582200-157588000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:157585400-157587200	Enhancers	NHDF-Ad	bronchial
4	chr3:157585600-157587200	Enhancers	Adipose Nuclei	Adipose
5	chr3:157586600-157587200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157586600-157590400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157586800-157587400	Enhancers	Fetal Muscle Leg	muscle
8	chr3:157587000-157587200	Flanking Active TSS	Osteobl	bone
9	chr3:157587000-157587600	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:157587000-157590400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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