Variant report

Variant	rs9881977
Chromosome Location	chr3:157548753-157548754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11916913	1.00[EUR][1000 genomes]
rs11919793	1.00[EUR][1000 genomes]
rs11921038	1.00[EUR][1000 genomes]
rs13314233	1.00[EUR][1000 genomes]
rs13327394	1.00[EUR][1000 genomes]
rs1515469	1.00[EUR][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs73021840	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs9809461	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9825478	1.00[EUR][1000 genomes]
rs9830519	1.00[EUR][1000 genomes]
rs9831137	1.00[EUR][1000 genomes]
rs9838427	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864058	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865305	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871830	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872671	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv592122	chr3:157542901-157573590	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157548200-157549400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:157548400-157549600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:157548400-157551600	Enhancers	NHDF-Ad	bronchial
4	chr3:157548600-157548800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr3:157548600-157548800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157548600-157549200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:157548600-157549200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:157548600-157549200	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links