Variant report

Variant	rs73025951
Chromosome Location	chr3:157854016-157854017
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157840416..157842184-chr3:157852166..157854407,2	MCF-7	breast:
2	chr3:157833746..157835863-chr3:157852221..157854631,2	MCF-7	breast:
3	chr3:157848788..157850916-chr3:157852376..157855126,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs6762923	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6784612	1.00[EUR][1000 genomes]
rs6784707	1.00[EUR][1000 genomes]
rs6809280	1.00[EUR][1000 genomes]
rs73013336	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs73027918	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7613737	1.00[EUR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9840759	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9858864	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9869501	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872495	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9873074	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9882507	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157828600-157857000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:157829200-157861400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:157830000-157866400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:157833200-157856200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:157836600-157854600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:157837600-157877600	Weak transcription	Fetal Heart	heart
7	chr3:157838800-157862600	Weak transcription	Pancreas	Pancrea
8	chr3:157840200-157856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:157840800-157856200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr3:157842800-157855600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:157842800-157855600	Weak transcription	Fetal Stomach	stomach
12	chr3:157842800-157855800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:157842800-157856400	Weak transcription	Placenta	Placenta
14	chr3:157842800-157856800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:157842800-157858000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:157842800-157858200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:157843000-157868600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:157843400-157856600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:157843600-157857200	Weak transcription	HepG2	liver
20	chr3:157843600-157866200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:157843600-157886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:157845800-157854200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:157845800-157857600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:157846000-157857400	Weak transcription	Spleen	Spleen
25	chr3:157846000-157860800	Weak transcription	Small Intestine	intestine
26	chr3:157846000-157868400	Weak transcription	Lung	lung
27	chr3:157846000-157869200	Weak transcription	Esophagus	oesophagus
28	chr3:157846200-157855800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:157846200-157857200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:157846200-157857200	Weak transcription	Brain Substantia Nigra	brain
31	chr3:157846200-157857400	Weak transcription	NHDF-Ad	bronchial
32	chr3:157846200-157857600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:157846200-157857800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:157846200-157859200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:157846200-157861800	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:157846200-157862800	Weak transcription	Fetal Brain Female	brain
37	chr3:157846200-157869200	Weak transcription	Psoas Muscle	Psoas
38	chr3:157846200-157869200	Weak transcription	NHEK	skin
39	chr3:157846200-157872000	Weak transcription	Primary T cells from cord blood	blood
40	chr3:157846200-157875200	Weak transcription	Gastric	stomach
41	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
43	chr3:157846600-157855800	Weak transcription	Hela-S3	cervix
44	chr3:157846600-157858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:157846600-157867400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:157846600-157878600	Weak transcription	HSMM	muscle
47	chr3:157846800-157854600	Weak transcription	Brain Anterior Caudate	brain
48	chr3:157846800-157857200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:157846800-157857600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:157846800-157860200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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