Variant report

Variant	rs9873074
Chromosome Location	chr3:157895742-157895743
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157889156..157892699-chr3:157895026..157898968,4	K562	blood:
2	chr3:157889156..157891158-chr3:157895026..157897482,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10049160	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13322986	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28428827	1.00[EUR][1000 genomes]
rs28506940	1.00[EUR][1000 genomes]
rs28608522	1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28720767	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6441190	1.00[EUR][1000 genomes]
rs6441192	1.00[EUR][1000 genomes]
rs6762923	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6776674	1.00[EUR][1000 genomes]
rs6784612	1.00[EUR][1000 genomes]
rs6784707	1.00[EUR][1000 genomes]
rs6787212	1.00[EUR][1000 genomes]
rs6798405	1.00[EUR][1000 genomes]
rs6804113	1.00[EUR][1000 genomes]
rs6809280	1.00[EUR][1000 genomes]
rs73013336	1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs73025951	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73027918	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73029851	0.81[AFR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73031618	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73031643	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73031646	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7613737	1.00[MKK][hapmap];1.00[EUR][1000 genomes]
rs7622013	1.00[EUR][1000 genomes]
rs7627082	1.00[EUR][1000 genomes]
rs9817119	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9824822	1.00[EUR][1000 genomes]
rs9829790	1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9840759	1.00[EUR][1000 genomes]
rs9841653	1.00[EUR][1000 genomes]
rs9852177	1.00[EUR][1000 genomes]
rs9852974	1.00[EUR][1000 genomes]
rs9858864	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9861869	0.86[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9869501	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872495	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9872642	1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9878828	1.00[EUR][1000 genomes]
rs9882507	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157854600-157911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:157868200-157916200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:157873200-157902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:157879200-157896000	Weak transcription	Pancreas	Pancrea
5	chr3:157886000-157899200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:157887000-157916400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:157887200-157902000	Weak transcription	NHDF-Ad	bronchial
8	chr3:157887200-157902600	Weak transcription	Gastric	stomach
9	chr3:157889000-157899800	Weak transcription	Primary T cells from cord blood	blood
10	chr3:157889800-157918600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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