Variant report

Variant	rs6809280
Chromosome Location	chr3:157883346-157883347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157828488..157831199-chr3:157883217..157885486,2	K562	blood:
2	chr3:157882190..157883909-chr3:157890033..157892770,2	K562	blood:
3	chr3:157881120..157883909-chr3:157889017..157891533,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10049160	1.00[EUR][1000 genomes]
rs12330339	1.00[EUR][1000 genomes]
rs13322986	1.00[EUR][1000 genomes]
rs13323462	1.00[EUR][1000 genomes]
rs28396261	1.00[EUR][1000 genomes]
rs28402668	1.00[EUR][1000 genomes]
rs28506940	1.00[EUR][1000 genomes]
rs28646251	1.00[EUR][1000 genomes]
rs28720767	1.00[EUR][1000 genomes]
rs4547654	1.00[ASN][1000 genomes]
rs58062483	1.00[EUR][1000 genomes]
rs6441190	1.00[EUR][1000 genomes]
rs6441192	1.00[EUR][1000 genomes]
rs6762923	1.00[EUR][1000 genomes]
rs6765159	1.00[EUR][1000 genomes]
rs6776674	1.00[EUR][1000 genomes]
rs6784612	1.00[EUR][1000 genomes]
rs6784707	1.00[EUR][1000 genomes]
rs6787212	1.00[EUR][1000 genomes]
rs73013336	1.00[EUR][1000 genomes]
rs73021877	1.00[EUR][1000 genomes]
rs73025925	1.00[EUR][1000 genomes]
rs73025951	1.00[EUR][1000 genomes]
rs73027918	1.00[EUR][1000 genomes]
rs73028000	1.00[EUR][1000 genomes]
rs73029897	1.00[EUR][1000 genomes]
rs73029899	1.00[EUR][1000 genomes]
rs73031618	1.00[EUR][1000 genomes]
rs73031643	1.00[EUR][1000 genomes]
rs73031646	1.00[EUR][1000 genomes]
rs7613737	1.00[EUR][1000 genomes]
rs7622013	1.00[EUR][1000 genomes]
rs7627082	1.00[EUR][1000 genomes]
rs9817119	1.00[EUR][1000 genomes]
rs9824822	1.00[EUR][1000 genomes]
rs9838425	1.00[EUR][1000 genomes]
rs9840759	1.00[EUR][1000 genomes]
rs9852177	1.00[EUR][1000 genomes]
rs9852974	1.00[EUR][1000 genomes]
rs9858864	1.00[EUR][1000 genomes]
rs9861869	1.00[EUR][1000 genomes]
rs9869501	1.00[EUR][1000 genomes]
rs9870885	1.00[EUR][1000 genomes]
rs9872495	1.00[EUR][1000 genomes]
rs9872642	1.00[EUR][1000 genomes]
rs9873074	1.00[EUR][1000 genomes]
rs9877843	1.00[EUR][1000 genomes]
rs9877873	1.00[EUR][1000 genomes]
rs9882507	1.00[EUR][1000 genomes]
rs9884071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157843600-157886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
4	chr3:157846800-157894400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:157848000-157888200	Weak transcription	Thymus	Thymus
6	chr3:157848200-157886800	Weak transcription	Ovary	ovary
7	chr3:157849400-157894400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:157850600-157886400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:157854600-157911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:157856200-157894400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:157856400-157885400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:157856400-157892400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:157860800-157886800	Weak transcription	Left Ventricle	heart
14	chr3:157866400-157885200	Weak transcription	GM12878-XiMat	blood
15	chr3:157867400-157885400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:157868200-157916200	Weak transcription	Primary B cells from cord blood	blood
17	chr3:157869400-157887600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:157873200-157902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:157874000-157884200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:157874000-157885600	Weak transcription	Primary T cells from cord blood	blood
21	chr3:157874000-157889600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:157875400-157885000	Weak transcription	Dnd41	blood
23	chr3:157875400-157885600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:157877400-157885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:157879200-157883600	Weak transcription	HSMM	muscle
26	chr3:157879200-157884600	Weak transcription	A549	lung
27	chr3:157879200-157885200	Weak transcription	K562	blood
28	chr3:157879200-157885600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:157879200-157896000	Weak transcription	Pancreas	Pancrea
30	chr3:157879400-157885200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:157879400-157885200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:157879400-157885600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:157879400-157885600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:157879600-157885400	Weak transcription	NHEK	skin
35	chr3:157879600-157885600	Weak transcription	NHLF	lung
36	chr3:157879800-157883400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:157882800-157884000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:157882800-157886800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:157883000-157884600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr3:157883000-157887200	Enhancers	NHDF-Ad	bronchial
41	chr3:157883200-157883800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:157883200-157884200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr3:157883200-157887800	Enhancers	Hela-S3	cervix
44	chr3:157883200-157887800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links