Variant report

Variant	rs7642446
Chromosome Location	chr3:81519861-81519862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1031265	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12233618	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631775	0.90[JPT][hapmap]
rs12633695	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634278	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12637192	0.85[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12638726	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs13059815	0.90[JPT][hapmap]
rs13082077	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13082584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082939	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs13086984	0.90[JPT][hapmap]
rs13087181	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13088641	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13092113	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13097903	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13100565	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1381302	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1381303	0.80[ASN][1000 genomes]
rs1461606	0.83[ASN][1000 genomes]
rs17018945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17019039	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17019042	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2307058	0.90[JPT][hapmap]
rs2639611	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs34031239	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34276340	0.86[ASN][1000 genomes]
rs34783916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34905475	0.82[ASN][1000 genomes]
rs35058426	0.85[ASN][1000 genomes]
rs35565301	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59299387	0.84[ASN][1000 genomes]
rs60231070	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6768592	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6768895	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs6769105	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs6769230	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6773695	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6783132	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785960	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790892	0.82[ASN][1000 genomes]
rs6805105	0.90[JPT][hapmap]
rs71326475	0.88[ASN][1000 genomes]
rs71326477	0.80[ASN][1000 genomes]
rs71326478	0.82[ASN][1000 genomes]
rs72902475	0.88[AFR][1000 genomes]
rs7615728	0.85[ASN][1000 genomes]
rs7616817	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7622741	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7631349	0.89[JPT][hapmap]
rs7637268	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7649028	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7650409	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820275	0.80[ASN][1000 genomes]
rs9811029	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs9811835	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9815059	0.83[ASN][1000 genomes]
rs9818063	0.85[ASN][1000 genomes]
rs9820815	0.83[ASN][1000 genomes]
rs9853643	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9867226	0.85[ASN][1000 genomes]
rs9871529	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81513600-81524000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:81518000-81520000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:81519200-81520400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:81519200-81521200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:81519600-81521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:81519600-81521200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:81519600-81521400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:81519600-81521400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:81519600-81522200	Enhancers	HUVEC	blood vessel
10	chr3:81519800-81520000	Enhancers	Osteobl	bone
11	chr3:81519800-81521000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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