Variant report

Variant	rs7642559
Chromosome Location	chr3:134346322-134346323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10935116	1.00[CHB][hapmap]
rs12487438	1.00[CHB][hapmap]
rs4311254	1.00[JPT][hapmap]
rs4455359	1.00[JPT][hapmap]
rs6768709	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7610168	1.00[JPT][hapmap]
rs7648167	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv520371	chr3:134344694-134351724	ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134319800-134353800	Weak transcription	Left Ventricle	heart
2	chr3:134321600-134349200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:134326000-134364800	Weak transcription	Osteobl	bone
4	chr3:134328200-134368200	Weak transcription	Brain Angular Gyrus	brain
5	chr3:134329400-134349000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:134330200-134356800	Weak transcription	Fetal Heart	heart
7	chr3:134330600-134360800	Weak transcription	Right Ventricle	heart
8	chr3:134331400-134349000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:134332400-134347800	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:134335000-134358800	Weak transcription	Aorta	Aorta
11	chr3:134337400-134356600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:134338400-134347000	Weak transcription	Brain Germinal Matrix	brain
13	chr3:134338800-134346400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:134339000-134358000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:134339200-134349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:134339600-134348200	Weak transcription	Brain Anterior Caudate	brain
17	chr3:134341600-134349000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:134341600-134349400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr3:134341800-134346800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:134342400-134346400	Weak transcription	Fetal Intestine Large	intestine
21	chr3:134342400-134348000	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:134342400-134348400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr3:134342400-134349000	Weak transcription	Fetal Intestine Small	intestine
24	chr3:134343000-134349400	Strong transcription	Fetal Muscle Leg	muscle
25	chr3:134344000-134349600	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:134345000-134348200	Strong transcription	Brain Cingulate Gyrus	brain
27	chr3:134345400-134346600	Weak transcription	Gastric	stomach

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