Variant report

Variant	rs7648167
Chromosome Location	chr3:134338588-134338589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4311254	1.00[JPT][hapmap]
rs4455359	1.00[JPT][hapmap]
rs7610168	1.00[JPT][hapmap]
rs7642559	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134319800-134353800	Weak transcription	Left Ventricle	heart
2	chr3:134321600-134349200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:134326000-134364800	Weak transcription	Osteobl	bone
4	chr3:134326200-134340200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:134327200-134339000	Weak transcription	Spleen	Spleen
6	chr3:134327200-134340000	Strong transcription	Stomach Smooth Muscle	stomach
7	chr3:134328200-134368200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:134329400-134349000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:134329600-134340000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:134330200-134356800	Weak transcription	Fetal Heart	heart
11	chr3:134330400-134339800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr3:134330600-134360800	Weak transcription	Right Ventricle	heart
13	chr3:134331400-134349000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:134332400-134340600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:134332400-134342000	Weak transcription	Psoas Muscle	Psoas
16	chr3:134332400-134347800	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:134333200-134341000	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:134335000-134358800	Weak transcription	Aorta	Aorta
19	chr3:134335400-134344400	Weak transcription	Gastric	stomach
20	chr3:134335800-134340000	Strong transcription	Fetal Muscle Leg	muscle
21	chr3:134336200-134339800	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:134336400-134339200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:134336800-134338600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134337000-134339200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:134337000-134340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:134337400-134356600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:134337600-134338800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:134337600-134340200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:134337600-134340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:134337800-134338600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:134337800-134339000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:134338000-134339200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:134338000-134340000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr3:134338200-134338800	Weak transcription	Brain Anterior Caudate	brain
35	chr3:134338400-134338600	Strong transcription	Fetal Stomach	stomach
36	chr3:134338400-134340000	Strong transcription	Fetal Intestine Small	intestine
37	chr3:134338400-134347000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links