Variant report

Variant	rs7642667
Chromosome Location	chr3:141041059-141041060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141041057..141042632-chr3:141043258..141046046,3	K562	blood:
2	chr3:141040944..141042691-chr3:141048357..141050949,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2292403	1.00[EUR][1000 genomes]
rs57879533	1.00[EUR][1000 genomes]
rs59166966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59722979	1.00[EUR][1000 genomes]
rs7653270	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7653555	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
2	chr3:141039000-141041200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr3:141039000-141041400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:141039200-141041200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr3:141039600-141041400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:141039600-141042800	Enhancers	Fetal Intestine Large	intestine
7	chr3:141039800-141042000	Weak transcription	HepG2	liver
8	chr3:141039800-141042800	Enhancers	Fetal Intestine Small	intestine
9	chr3:141040000-141041200	Enhancers	Small Intestine	intestine
10	chr3:141040000-141041400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:141040000-141042800	Weak transcription	K562	blood
12	chr3:141040200-141041400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:141040200-141042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:141040200-141042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:141040200-141044000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:141040200-141044600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:141040200-141045200	Weak transcription	Lung	lung
18	chr3:141040400-141042800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:141040400-141043000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:141040600-141041800	Weak transcription	NHDF-Ad	bronchial
21	chr3:141040600-141042200	Weak transcription	A549	lung
22	chr3:141040600-141045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:141040600-141049000	Weak transcription	Hela-S3	cervix
24	chr3:141040600-141049200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:141040800-141044800	Weak transcription	HUVEC	blood vessel

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