Variant report

Variant	rs7653270
Chromosome Location	chr3:141039107-141039108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2292403	1.00[EUR][1000 genomes]
rs57879533	1.00[EUR][1000 genomes]
rs59166966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59722979	1.00[EUR][1000 genomes]
rs7642667	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7653555	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031600-141039800	Weak transcription	NHDF-Ad	bronchial
2	chr3:141031800-141039200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:141031800-141039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
5	chr3:141032200-141039800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:141032600-141039600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:141035800-141040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:141038800-141039400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:141039000-141039200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:141039000-141039600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:141039000-141039600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:141039000-141039800	ZNF genes & repeats	GM12878-XiMat	blood
13	chr3:141039000-141041000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:141039000-141041200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:141039000-141041400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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