Variant report

Variant	rs7642773
Chromosome Location	chr3:150192605-150192606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150190395..150192190-chr3:150192308..150195252,2	MCF-7	breast:
2	chr3:150185308..150188037-chr3:150190947..150194724,4	K562	blood:
3	chr3:150125653..150129014-chr3:150192577..150196222,3	K562	blood:
4	chr3:150185308..150187363-chr3:150191883..150194072,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10154963	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10804747	0.90[JPT][hapmap]
rs11927604	0.84[YRI][hapmap]
rs13066779	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1450343	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1463229	0.95[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1562787	0.95[JPT][hapmap]
rs1562789	0.84[JPT][hapmap]
rs4256160	0.89[CEU][hapmap]
rs4323025	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6414375	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763422	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6770312	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6778948	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6785158	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6803715	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7430585	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9843097	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9844184	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9881867	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150177000-150200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:150179200-150201000	Weak transcription	Fetal Lung	lung
3	chr3:150187400-150196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:150187800-150201400	Weak transcription	HSMMtube	muscle
5	chr3:150188200-150197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:150188200-150218800	Weak transcription	HSMM	muscle
7	chr3:150188400-150193600	Weak transcription	Osteobl	bone
8	chr3:150188400-150193800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:150188600-150192800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:150190400-150193000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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