Variant report

Variant	rs9881867
Chromosome Location	chr3:150104445-150104446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150103049..150105345-chr3:150109294..150110988,2	MCF-7	breast:
2	chr3:150103838..150106691-chr3:150117880..150119518,2	MCF-7	breast:
3	chr3:150093390..150097610-chr3:150100766..150105118,7	MCF-7	breast:
4	chr3:150101273..150104730-chr3:150121434..150128062,8	K562	blood:
5	chr3:150102544..150105170-chr3:150106754..150108675,2	K562	blood:
6	chr3:150101805..150104730-chr3:150121434..150125041,3	K562	blood:
7	chr3:150103102..150105201-chr3:150113061..150115315,2	K562	blood:
8	chr3:150100542..150102255-chr3:150102482..150105071,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10154963	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10804747	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13066779	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1376025	0.80[ASN][1000 genomes]
rs1450341	0.84[ASN][1000 genomes]
rs1450343	0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1463229	0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1466131	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1562787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1562789	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2903834	0.81[JPT][hapmap]
rs4323025	0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4681202	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6414375	0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763422	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6770312	0.95[EUR][1000 genomes]
rs6778948	0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7430585	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7642773	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9843097	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9844184	0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9855441	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
2	chr3:150090800-150107000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:150090800-150108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:150090800-150111000	Weak transcription	NHEK	skin
6	chr3:150094600-150106200	Weak transcription	HSMM	muscle
7	chr3:150094600-150108800	Weak transcription	NHLF	lung
8	chr3:150094800-150108200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:150096000-150105200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:150096200-150108400	Weak transcription	A549	lung
11	chr3:150097800-150111200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:150102800-150111400	Weak transcription	Fetal Intestine Large	intestine
13	chr3:150102800-150118200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:150103000-150104800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:150103200-150106800	Weak transcription	Fetal Heart	heart
16	chr3:150103600-150106800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:150103600-150112200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:150103800-150105000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:150103800-150105200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:150103800-150105800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:150103800-150106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:150103800-150107400	Weak transcription	Thymus	Thymus
23	chr3:150103800-150107600	Weak transcription	Hela-S3	cervix
24	chr3:150103800-150107800	Weak transcription	Primary T cells from cord blood	blood
25	chr3:150103800-150108000	Weak transcription	Fetal Thymus	thymus
26	chr3:150103800-150108200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:150103800-150108800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:150103800-150109000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:150103800-150109600	Weak transcription	K562	blood
30	chr3:150104000-150105600	Enhancers	GM12878-XiMat	blood

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