Variant report

Variant	rs7646997
Chromosome Location	chr3:112818217-112818218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12695286	0.92[ASN][1000 genomes]
rs9288968	0.92[ASN][1000 genomes]
rs9811423	0.93[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112815400-112822400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:112815600-112822400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:112816200-112821600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:112816200-112821800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:112816200-112822000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:112816600-112818400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:112816600-112818400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:112816600-112818800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:112817600-112824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:112818000-112822400	Weak transcription	A549	lung
13	chr3:112818200-112818600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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