Variant report

Variant	rs9288968
Chromosome Location	chr3:112817834-112817835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12695286	1.00[ASN][1000 genomes]
rs7646997	0.92[ASN][1000 genomes]
rs9811423	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112814600-112818200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:112814600-112818200	Enhancers	HMEC	breast
5	chr3:112814800-112818000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:112815000-112818000	Enhancers	Osteobl	bone
7	chr3:112815400-112818000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:112815400-112822400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:112815600-112822400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:112816000-112818200	Enhancers	NHEK	skin
11	chr3:112816200-112821600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:112816200-112821800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:112816200-112822000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:112816600-112818000	Enhancers	HSMM	muscle
15	chr3:112816600-112818200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:112816600-112818200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:112816600-112818400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:112816600-112818400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:112816600-112818800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:112816800-112818000	Enhancers	Hela-S3	cervix
21	chr3:112817600-112818000	Enhancers	A549	lung
22	chr3:112817600-112824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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