Variant report

Variant	rs7649516
Chromosome Location	chr3:133842994-133842995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12107856	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12108083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6796675	1.00[AMR][1000 genomes]
rs7428966	1.00[AMR][1000 genomes]
rs9968147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133827600-133862800	Weak transcription	Left Ventricle	heart
2	chr3:133838800-133847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:133840600-133862800	Weak transcription	Right Ventricle	heart
4	chr3:133840800-133843200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:133840800-133862800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:133841600-133843000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:133841600-133843000	ZNF genes & repeats	Aorta	Aorta
8	chr3:133841600-133843200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133841600-133843200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:133841600-133843200	ZNF genes & repeats	Pancreas	Pancrea
11	chr3:133841800-133843000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:133841800-133843200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:133841800-133843400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:133842000-133843000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:133842000-133843000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:133842000-133843000	ZNF genes & repeats	Gastric	stomach
17	chr3:133842000-133847600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133842000-133848000	Weak transcription	Ovary	ovary
19	chr3:133842000-133872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:133842200-133843000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:133842200-133843200	ZNF genes & repeats	Placenta	Placenta
22	chr3:133842400-133843000	Strong transcription	Stomach Smooth Muscle	stomach
23	chr3:133842600-133843400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr3:133842600-133847400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:133842600-133862800	Weak transcription	Adipose Nuclei	Adipose
26	chr3:133842600-133870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:133842800-133847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:133842800-133847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:133842800-133872000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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