Variant report

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:112046196-112046677	Hela-S3	cervix:	n/a	n/a
2	ATF2	chr3:112046132-112046703	GM12878	blood:	n/a	n/a
3	CTCF	chr3:112046258-112046643	HCT-116	colon:	n/a	n/a
4	RAD21	chr3:112046189-112046704	MCF-7	breast:	n/a	n/a
5	RUNX3	chr3:112046260-112046701	GM12878	blood:	n/a	n/a
6	CTCF	chr3:112046069-112046652	HCT-116	colon:	n/a	n/a
7	RAD21	chr3:112046136-112046683	HCT-116	colon:	n/a	n/a
8	RAD21	chr3:112046196-112046665	GM12878	blood:	n/a	n/a
9	CTCF	chr3:112046149-112046631	IMR90	lung:	n/a	n/a
10	FOXM1	chr3:112046129-112046657	GM12878	blood:	n/a	n/a
11	SMC3	chr3:112046194-112046813	SK-N-SH	brain:	n/a	n/a
12	RAD21	chr3:112046185-112046643	IMR90	lung:	n/a	n/a
13	RAD21	chr3:112045996-112046682	SK-N-SH	brain:	n/a	n/a
14	CHD1	chr3:112046088-112046630	IMR90	lung:	n/a	n/a
15	SMC3	chr3:112046178-112046667	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr3:112046116-112046671	SK-N-SH	brain:	n/a	n/a
17	RAD21	chr3:112046189-112046641	H1-hESC	embryonic stem cell:	n/a	n/a
18	SMC3	chr3:112046171-112046755	GM12878	blood:	n/a	n/a
19	CTCF	chr3:112046153-112046646	MCF-7	breast:	n/a	n/a
20	RAD21	chr3:112046100-112046670	A549	lung:	n/a	n/a
21	RAD21	chr3:112046158-112046652	A549	lung:	n/a	n/a
22	CTCF	chr3:112046500-112046650	HFF-Myc	foreskin:	n/a	n/a
23	RAD21	chr3:112046206-112046641	ECC-1	luminal epithelium:	n/a	n/a
24	RAD21	chr3:112046202-112046682	HCT-116	colon:	n/a	n/a
25	CTCF	chr3:112045754-112046720	A549	lung:	n/a	n/a
26	FOXM1	chr3:112046165-112046694	GM12878	blood:	n/a	n/a
27	MYC	chr3:112045965-112046632	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:112045925..112046858-chr3:112237972..112238492,2	K562	blood:
2	chr3:112045750..112047025-chr3:112237531..112238950,15	MCF-7	breast:
3	chr3:112046305..112046882-chr3:112237913..112238884,3	MCF-7	breast:
4	chr3:112045532..112046934-chr3:112156222..112157470,7	MCF-7	breast:
5	chr3:112046007..112046874-chr3:112156015..112156737,3	MCF-7	breast:

No data

Variant related genes	Relation type
CD200	TF binding region

rSNPs within LD-proxies of this variant (count:5)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112041400-112050600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:112041400-112050800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:112044800-112050600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:112046600-112046800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:112046600-112046800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:112046600-112050600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:112046600-112050800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:112046600-112051400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:112046600-112051600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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