Variant report

Variant	rs7650483
Chromosome Location	chr3:112754626-112754627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10460813	0.82[CHB][hapmap];0.81[MEX][hapmap]
rs1110819	0.86[CHB][hapmap]
rs11718449	0.91[CEU][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs12495569	0.96[EUR][1000 genomes]
rs1809629	0.89[CHB][hapmap]
rs2276769	0.87[CHB][hapmap];0.81[MEX][hapmap]
rs2399460	0.84[ASW][hapmap];0.86[CHB][hapmap];0.87[MEX][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34671634	0.97[EUR][1000 genomes]
rs3868879	0.91[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3872609	0.85[CHB][hapmap]
rs3872611	0.84[EUR][1000 genomes]
rs3901416	0.86[EUR][1000 genomes]
rs6438125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7620940	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7642680	0.91[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7650656	0.91[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs984706	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7650483	SIDT1	cis	cerebellum	SCAN
rs7650483	GTPBP8	cis	multi-tissue	Pritchard
rs7650483	C3orf17	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112740800-112770200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112749800-112762800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112754600-112754800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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