Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:112358731..112360862-chr3:112753827..112757709,4	MCF-7	breast:
2	chr3:112738105..112741068-chr3:112752347..112755322,2	MCF-7	breast:
3	chr3:112754036..112754942-chr3:113006666..113007589,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934211	1.00[MEX][hapmap]
rs10934213	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11718449	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12495569	0.89[EUR][1000 genomes]
rs1488189	1.00[MEX][hapmap];0.82[TSI][hapmap]
rs2293562	0.85[CHB][hapmap]
rs2306857	0.85[CHB][hapmap]
rs2399460	0.82[CEU][hapmap]
rs2895406	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34671634	0.90[EUR][1000 genomes]
rs3868879	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs3872610	0.85[CHB][hapmap];0.83[MEX][hapmap]
rs3872611	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3889123	0.85[CHB][hapmap]
rs3901416	0.80[EUR][1000 genomes]
rs4082467	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6438125	0.91[EUR][1000 genomes]
rs7620940	0.88[EUR][1000 genomes]
rs7642680	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7650483	0.91[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]
rs9288967	0.85[CHB][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs9874803	0.85[CHB][hapmap];0.94[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7650656	SIDT1	cis	cerebellum	SCAN
rs7650656	GTPBP8	Cis_1M	lymphoblastoid	RTeQTL
rs7650656	C3orf17	cis	cerebellum	SCAN
rs7650656	GTPBP8	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112740800-112770200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112749800-112762800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112753400-112754600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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