Variant report

Variant	rs7652760
Chromosome Location	chr3:142168618-142168619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142166755..142169411-chr3:142174583..142176894,2	K562	blood:
2	chr3:142166774..142168881-chr3:142175818..142179023,4	MCF-7	breast:
3	chr3:142167068..142168704-chr3:142178358..142179911,2	K562	blood:

Variant related genes	Relation type
ENSG00000175054	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs34502778	1.00[EUR][1000 genomes]
rs35582603	1.00[EUR][1000 genomes]
rs35978765	1.00[EUR][1000 genomes]
rs3924057	1.00[EUR][1000 genomes]
rs55895932	1.00[EUR][1000 genomes]
rs56022646	1.00[EUR][1000 genomes]
rs56050554	1.00[EUR][1000 genomes]
rs57625476	1.00[EUR][1000 genomes]
rs59936227	1.00[EUR][1000 genomes]
rs6440101	1.00[EUR][1000 genomes]
rs6768384	1.00[EUR][1000 genomes]
rs6770411	1.00[EUR][1000 genomes]
rs6776083	1.00[EUR][1000 genomes]
rs6781412	1.00[EUR][1000 genomes]
rs6791858	1.00[EUR][1000 genomes]
rs6792428	1.00[EUR][1000 genomes]
rs7613884	1.00[EUR][1000 genomes]
rs7615480	1.00[EUR][1000 genomes]
rs7620068	1.00[EUR][1000 genomes]
rs7621810	1.00[EUR][1000 genomes]
rs7622266	1.00[EUR][1000 genomes]
rs7625306	1.00[EUR][1000 genomes]
rs7625764	1.00[EUR][1000 genomes]
rs7628677	1.00[EUR][1000 genomes]
rs7653387	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1000083	chr3:141956718-142172666	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv877558	chr3:142123841-142331360	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv877559	chr3:142132749-142331360	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv877561	chr3:142152925-142331360	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
9	nsv528954	chr3:142164017-142219542	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142167200-142168800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142167200-142168800	Weak transcription	Left Ventricle	heart
3	chr3:142167200-142169000	Weak transcription	Spleen	Spleen
4	chr3:142167200-142169200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:142167200-142169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:142167200-142174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:142167200-142174800	Weak transcription	Lung	lung
8	chr3:142167200-142176800	Weak transcription	Gastric	stomach
9	chr3:142167200-142178800	Weak transcription	Small Intestine	intestine
10	chr3:142167200-142187600	Weak transcription	Esophagus	oesophagus
11	chr3:142167200-142192400	Weak transcription	Pancreas	Pancrea
12	chr3:142167400-142169000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:142167400-142169000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:142167400-142169200	Weak transcription	Aorta	Aorta
15	chr3:142167400-142169600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:142167400-142171000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:142167400-142175600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:142167400-142176400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:142167400-142176800	Weak transcription	Placenta	Placenta
20	chr3:142167400-142179600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:142167400-142199400	Weak transcription	Colonic Mucosa	Colon
22	chr3:142167400-142199600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:142167400-142234600	Weak transcription	Psoas Muscle	Psoas
24	chr3:142167600-142168800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:142167600-142169000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:142167600-142169000	Weak transcription	Fetal Thymus	thymus
27	chr3:142167600-142169200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:142167600-142169200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr3:142167600-142169200	Weak transcription	Fetal Heart	heart
30	chr3:142167600-142169400	Weak transcription	Adipose Nuclei	Adipose
31	chr3:142167600-142169600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:142167600-142169600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:142167600-142169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:142167600-142169800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:142167600-142169800	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:142167600-142169800	Weak transcription	GM12878-XiMat	blood
37	chr3:142167600-142170000	Weak transcription	Thymus	Thymus
38	chr3:142167600-142171600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:142167600-142171600	Weak transcription	K562	blood
40	chr3:142167600-142176400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:142167600-142177000	Weak transcription	Right Ventricle	heart
42	chr3:142167600-142177000	Weak transcription	NH-A	brain
43	chr3:142167600-142177400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr3:142167600-142177600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:142167600-142177600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:142167600-142180000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:142167600-142180000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:142167600-142187200	Weak transcription	Fetal Brain Male	brain
49	chr3:142167600-142191800	Weak transcription	Fetal Brain Female	brain
50	chr3:142167600-142199600	Weak transcription	Ovary	ovary

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