Variant report

Variant	rs7653231
Chromosome Location	chr3:86089746-86089747
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11923789	1.00[CEU][hapmap]
rs12636273	0.94[YRI][hapmap]
rs2875492	1.00[CEU][hapmap]
rs57279066	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60447537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804056	1.00[CEU][hapmap]
rs6804410	1.00[CEU][hapmap]
rs73843515	1.00[AMR][1000 genomes]
rs73843560	0.87[EUR][1000 genomes]
rs73843562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845729	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7610007	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7616471	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9713675	0.87[AMR][1000 genomes]
rs9824085	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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