Variant report

Variant	rs6804056
Chromosome Location	chr3:86073653-86073654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11923789	1.00[CEU][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs17023747	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17023752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17023806	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17024230	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17024414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17024547	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17024768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17024881	0.95[ASN][1000 genomes]
rs2009641	1.00[CEU][hapmap]
rs2324978	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2875492	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2875498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs41526847	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4410440	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs4410441	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4519715	1.00[CEU][hapmap]
rs60543061	0.95[ASN][1000 genomes]
rs6771930	0.95[ASN][1000 genomes]
rs6780895	1.00[JPT][hapmap]
rs6804410	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs7610007	1.00[CEU][hapmap]
rs7613552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7615721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7616471	1.00[CEU][hapmap]
rs7618401	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7650850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7653231	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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