Variant report

Variant	rs4410440
Chromosome Location	chr3:86117391-86117392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12638182	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs17023747	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17023752	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17023806	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17024230	1.00[CHB][hapmap]
rs17024414	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs17024547	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17024768	1.00[CHB][hapmap]
rs17024881	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2324978	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2875498	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41526847	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4410441	1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57522321	1.00[EUR][1000 genomes]
rs58261433	0.87[EUR][1000 genomes]
rs59705785	0.87[EUR][1000 genomes]
rs59867513	1.00[EUR][1000 genomes]
rs60044734	0.87[EUR][1000 genomes]
rs60543061	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61043144	1.00[EUR][1000 genomes]
rs61508801	1.00[EUR][1000 genomes]
rs61519039	0.87[EUR][1000 genomes]
rs6771930	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6804056	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs6804410	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs73843565	0.87[EUR][1000 genomes]
rs73843566	0.87[EUR][1000 genomes]
rs73843568	0.87[EUR][1000 genomes]
rs7613552	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7615721	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7618401	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7650850	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86111000-86119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:86115800-86118600	Weak transcription	Brain Cingulate Gyrus	brain

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