Variant report

Variant	rs7613552
Chromosome Location	chr3:86079138-86079139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:86078811-86079174	HepG2	liver:	n/a	chr3:86078998-86079009 chr3:86078977-86078988
2	BACH1	chr3:86078855-86079170	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOS	chr3:86078776-86079179	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL2	chr3:86078762-86079149	A549	lung:	n/a	n/a
5	JUND	chr3:86078779-86079188	H1-hESC	embryonic stem cell:	n/a	chr3:86078998-86079009 chr3:86078977-86078988
6	JUND	chr3:86078772-86079212	Hela-S3	cervix:	n/a	chr3:86078998-86079009 chr3:86078977-86078988
7	FOS	chr3:86078810-86079152	MCF10A-Er-Src	breast:	n/a	n/a
8	JUN	chr3:86078829-86079156	HepG2	liver:	n/a	n/a
9	JUN	chr3:86078787-86079243	Hela-S3	cervix:	n/a	chr3:86079215-86079224
10	FOS	chr3:86078835-86079169	MCF10A-Er-Src	breast:	n/a	n/a
11	JUN	chr3:86078869-86079172	HUVEC	blood vessel:	n/a	n/a
12	JUND	chr3:86078627-86079328	SK-N-SH	brain:	n/a	chr3:86078998-86079009 chr3:86079215-86079224 chr3:86078977-86078988
13	FOS	chr3:86078736-86079172	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CADM2-AS1	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12638182	0.87[EUR][1000 genomes]
rs17023747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17023752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17023806	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17024230	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17024414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17024547	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024768	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17024881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324978	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41526847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4410440	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4410441	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57522321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58261433	0.87[EUR][1000 genomes]
rs59705785	0.87[EUR][1000 genomes]
rs59867513	1.00[EUR][1000 genomes]
rs60044734	0.87[EUR][1000 genomes]
rs60543061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61043144	1.00[EUR][1000 genomes]
rs61508801	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61519039	0.87[EUR][1000 genomes]
rs6771930	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780895	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6804056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6804410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73843565	0.87[EUR][1000 genomes]
rs73843566	0.87[EUR][1000 genomes]
rs73843568	0.87[EUR][1000 genomes]
rs7615721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7650850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86078800-86079200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:86078800-86079200	Enhancers	A549	lung

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