Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12638182	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023747	0.87[EUR][1000 genomes]
rs17023752	0.87[EUR][1000 genomes]
rs17023806	0.87[EUR][1000 genomes]
rs17024547	0.87[EUR][1000 genomes]
rs17024881	0.87[EUR][1000 genomes]
rs2324978	0.87[EUR][1000 genomes]
rs2875498	0.87[EUR][1000 genomes]
rs4410440	0.87[EUR][1000 genomes]
rs4410441	0.87[EUR][1000 genomes]
rs57522321	0.87[EUR][1000 genomes]
rs58261433	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59705785	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59867513	0.87[EUR][1000 genomes]
rs60543061	0.87[EUR][1000 genomes]
rs61043144	0.87[EUR][1000 genomes]
rs61508801	0.87[EUR][1000 genomes]
rs61519039	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771930	0.87[EUR][1000 genomes]
rs6809247	0.83[ASN][1000 genomes]
rs73843565	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73843566	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7613552	0.87[EUR][1000 genomes]
rs7615721	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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