Variant report
| Variant | rs61043144 |
|---|---|
| Chromosome Location | chr3:86194541-86194542 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs12638182 | 0.87[EUR][1000 genomes] |
| rs17023747 | 1.00[EUR][1000 genomes] |
| rs17023752 | 1.00[EUR][1000 genomes] |
| rs17023806 | 1.00[EUR][1000 genomes] |
| rs17024547 | 1.00[EUR][1000 genomes] |
| rs17024881 | 1.00[EUR][1000 genomes] |
| rs2324978 | 1.00[EUR][1000 genomes] |
| rs2875498 | 1.00[EUR][1000 genomes] |
| rs4410440 | 1.00[EUR][1000 genomes] |
| rs4410441 | 1.00[EUR][1000 genomes] |
| rs56952942 | 0.97[ASN][1000 genomes] |
| rs57522321 | 1.00[EUR][1000 genomes] |
| rs57727391 | 0.87[ASN][1000 genomes] |
| rs58261433 | 0.87[EUR][1000 genomes] |
| rs59705785 | 0.87[EUR][1000 genomes] |
| rs59867513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60044734 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60543061 | 1.00[EUR][1000 genomes] |
| rs61508801 | 1.00[EUR][1000 genomes] |
| rs61519039 | 0.87[EUR][1000 genomes] |
| rs6771930 | 1.00[EUR][1000 genomes] |
| rs7340539 | 0.97[ASN][1000 genomes] |
| rs7340745 | 0.97[ASN][1000 genomes] |
| rs73843565 | 0.87[EUR][1000 genomes] |
| rs73843566 | 0.87[EUR][1000 genomes] |
| rs73843568 | 0.87[EUR][1000 genomes] |
| rs7613552 | 1.00[EUR][1000 genomes] |
| rs7615721 | 1.00[EUR][1000 genomes] |
| rs7649961 | 1.00[ASN][1000 genomes] |
| rs9310002 | 0.97[ASN][1000 genomes] |
| rs9845174 | 0.97[ASN][1000 genomes] |
| rs9857404 | 0.97[ASN][1000 genomes] |
| rs9882636 | 0.97[ASN][1000 genomes] |
| rs9882827 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv428089 | chr3:86183922-86217535 | Enhancers Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86185200-86195200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
