Variant report

Variant	rs9882827
Chromosome Location	chr3:86226902-86226903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17026450	0.89[EUR][1000 genomes]
rs56952942	1.00[ASN][1000 genomes]
rs57727391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59867513	0.97[ASN][1000 genomes]
rs60044734	0.97[ASN][1000 genomes]
rs61043144	0.97[ASN][1000 genomes]
rs6549081	0.82[AFR][1000 genomes]
rs6780632	0.82[AFR][1000 genomes]
rs7340539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340745	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623099	0.82[AFR][1000 genomes]
rs7649961	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310002	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845174	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857404	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882636	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86225400-86227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:86226000-86228000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:86226000-86228000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:86226000-86228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:86226000-86230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:86226200-86227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:86226200-86227600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:86226400-86227200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:86226400-86227600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:86226400-86227600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:86226400-86227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:86226400-86228000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:86226400-86228000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:86226600-86227000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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