Variant report

Variant	rs7623099
Chromosome Location	chr3:86226002-86226003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033139	0.89[EUR][1000 genomes]
rs34647294	0.89[EUR][1000 genomes]
rs4624562	0.86[EUR][1000 genomes]
rs6549081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625548	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7651338	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9814386	0.89[EUR][1000 genomes]
rs9814869	0.89[EUR][1000 genomes]
rs9837815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9852147	0.89[EUR][1000 genomes]
rs9857114	0.89[EUR][1000 genomes]
rs9867155	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875820	0.89[EUR][1000 genomes]
rs9882827	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86223200-86226200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:86223400-86226400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:86223600-86226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:86225000-86226400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:86225200-86226200	Weak transcription	Fetal Kidney	kidney
7	chr3:86225200-86226400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:86225200-86226600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:86225400-86226400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:86225400-86227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:86225600-86226400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:86225800-86226200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:86226000-86228000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:86226000-86228000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:86226000-86228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:86226000-86230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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