Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1033139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324981	0.80[CHD][hapmap]
rs34647294	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35892951	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4133181	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4624562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6549081	0.89[EUR][1000 genomes]
rs6780632	0.89[EUR][1000 genomes]
rs7610076	0.87[CHB][hapmap]
rs7623099	0.89[EUR][1000 genomes]
rs7625548	0.87[EUR][1000 genomes]
rs7651338	0.88[EUR][1000 genomes]
rs9814386	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824085	0.83[JPT][hapmap]
rs9837815	0.86[EUR][1000 genomes]
rs9852147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857114	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867155	0.87[EUR][1000 genomes]
rs9867266	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86226000-86230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86227600-86230600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:86228000-86229000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:86228000-86229800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:86228400-86229600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:86228600-86229800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:86228600-86230600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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