Variant report

Variant	rs6780632
Chromosome Location	chr3:86223318-86223319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033139	0.89[EUR][1000 genomes]
rs34647294	0.89[EUR][1000 genomes]
rs4624562	0.86[EUR][1000 genomes]
rs6549081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625548	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7651338	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9814386	0.89[EUR][1000 genomes]
rs9814869	0.89[EUR][1000 genomes]
rs9837815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9852147	0.89[EUR][1000 genomes]
rs9857114	0.89[EUR][1000 genomes]
rs9867155	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875820	0.89[EUR][1000 genomes]
rs9882827	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86220000-86224000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86222600-86223800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr3:86222600-86224200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:86222600-86224600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:86222600-86224600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:86222600-86225200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:86222600-86225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:86222600-86226000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:86222600-86226000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:86222600-86226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:86223200-86224200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:86223200-86224200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:86223200-86226200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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