Variant report

Variant	rs56952942
Chromosome Location	chr3:86244802-86244803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2875498	0.87[AMR][1000 genomes]
rs4410441	0.87[AMR][1000 genomes]
rs57727391	0.90[ASN][1000 genomes]
rs59867513	0.97[ASN][1000 genomes]
rs60044734	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61043144	0.97[ASN][1000 genomes]
rs7340539	1.00[ASN][1000 genomes]
rs7340745	1.00[ASN][1000 genomes]
rs7649961	0.97[ASN][1000 genomes]
rs9310002	1.00[ASN][1000 genomes]
rs9845174	1.00[ASN][1000 genomes]
rs9857404	1.00[ASN][1000 genomes]
rs9882636	1.00[ASN][1000 genomes]
rs9882827	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86244600-86245000	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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