Variant report

Variant	rs7649961
Chromosome Location	chr3:86213671-86213672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17026450	0.83[EUR][1000 genomes]
rs56952942	0.97[ASN][1000 genomes]
rs57727391	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59867513	1.00[ASN][1000 genomes]
rs60044734	1.00[ASN][1000 genomes]
rs61043144	1.00[ASN][1000 genomes]
rs6809247	0.83[EUR][1000 genomes]
rs7340539	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7340745	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9310002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9845174	0.97[ASN][1000 genomes]
rs9857404	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882636	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882827	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428089	chr3:86183922-86217535	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1002069	chr3:86213190-86214074	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3462142	chr3:86213273-86213821	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3462140	chr3:86213327-86213806	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3462143	chr3:86213332-86213794	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3462144	chr3:86213340-86213743	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv2881	chr3:86213353-86213767	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv3417967	chr3:86213365-86213740	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3462145	chr3:86213388-86213728	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv992835	chr3:86213403-86213719	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3462146	chr3:86213404-86213724	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86213600-86213800	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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