Variant report

Variant	rs60044734
Chromosome Location	chr3:86211714-86211715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17023747	0.87[EUR][1000 genomes]
rs17023752	0.87[EUR][1000 genomes]
rs17023806	0.87[EUR][1000 genomes]
rs17024547	0.87[EUR][1000 genomes]
rs17024881	0.87[EUR][1000 genomes]
rs2324978	0.87[EUR][1000 genomes]
rs2875498	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4410440	0.87[EUR][1000 genomes]
rs4410441	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56952942	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57522321	0.87[EUR][1000 genomes]
rs57727391	0.87[ASN][1000 genomes]
rs59867513	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60543061	0.87[EUR][1000 genomes]
rs61043144	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508801	0.87[EUR][1000 genomes]
rs6771930	0.87[EUR][1000 genomes]
rs7340539	0.97[ASN][1000 genomes]
rs7340745	0.97[ASN][1000 genomes]
rs7613552	0.87[EUR][1000 genomes]
rs7615721	0.87[EUR][1000 genomes]
rs7649961	1.00[ASN][1000 genomes]
rs9310002	0.97[ASN][1000 genomes]
rs9845174	0.97[ASN][1000 genomes]
rs9857404	0.97[ASN][1000 genomes]
rs9882636	0.97[ASN][1000 genomes]
rs9882827	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428089	chr3:86183922-86217535	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86211200-86212600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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