Variant report
| Variant | rs60543061 |
|---|---|
| Chromosome Location | chr3:86113791-86113792 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12638182 | 0.87[EUR][1000 genomes] |
| rs17023747 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17023752 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17023806 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17024547 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17024881 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2324978 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2875498 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4410440 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4410441 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57522321 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58261433 | 0.87[EUR][1000 genomes] |
| rs59705785 | 0.87[EUR][1000 genomes] |
| rs59867513 | 1.00[EUR][1000 genomes] |
| rs60044734 | 0.87[EUR][1000 genomes] |
| rs61043144 | 1.00[EUR][1000 genomes] |
| rs61508801 | 1.00[EUR][1000 genomes] |
| rs61519039 | 0.87[EUR][1000 genomes] |
| rs6771930 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73843565 | 0.87[EUR][1000 genomes] |
| rs73843566 | 0.87[EUR][1000 genomes] |
| rs73843568 | 0.87[EUR][1000 genomes] |
| rs7613552 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7615721 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86111000-86119600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
