Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-4	chr3:86041333-86043864	ENSG00000239519.1

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12638182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17023747	0.87[EUR][1000 genomes]
rs17023752	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17023806	0.87[EUR][1000 genomes]
rs17024547	0.87[EUR][1000 genomes]
rs17024881	0.87[EUR][1000 genomes]
rs2324978	0.87[EUR][1000 genomes]
rs2875498	0.87[EUR][1000 genomes]
rs4410440	0.87[EUR][1000 genomes]
rs4410441	0.87[EUR][1000 genomes]
rs57522321	0.87[EUR][1000 genomes]
rs58261433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59705785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59867513	0.87[EUR][1000 genomes]
rs60543061	0.87[EUR][1000 genomes]
rs61043144	0.87[EUR][1000 genomes]
rs61508801	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6771930	0.87[EUR][1000 genomes]
rs73843565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73843566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73843568	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7613552	0.87[EUR][1000 genomes]
rs7615721	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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