Variant report

Variant	rs12638182
Chromosome Location	chr3:86044224-86044225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11127909	0.81[JPT][hapmap]
rs17023747	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs17023752	1.00[GIH][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17023806	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs17024414	1.00[GIH][hapmap]
rs17024547	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs17024881	0.87[EUR][1000 genomes]
rs2324978	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs2875498	0.87[EUR][1000 genomes]
rs41526847	1.00[GIH][hapmap]
rs4410440	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs4410441	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs4629352	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs57522321	0.87[EUR][1000 genomes]
rs58261433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59705785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59867513	0.87[EUR][1000 genomes]
rs60543061	0.87[EUR][1000 genomes]
rs61043144	0.87[EUR][1000 genomes]
rs61508801	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61519039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771930	0.87[EUR][1000 genomes]
rs6809247	0.83[ASN][1000 genomes]
rs73843565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73843566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73843568	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430551	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7613552	0.87[EUR][1000 genomes]
rs7615721	0.87[EUR][1000 genomes]
rs7618401	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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