Variant report

Variant	rs7654435
Chromosome Location	chr4:103209901-103209902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10020497	1.00[CEU][hapmap]
rs10020659	1.00[CEU][hapmap]
rs1045155	1.00[CEU][hapmap]
rs13434535	1.00[CEU][hapmap]
rs6836807	1.00[CEU][hapmap]
rs7681437	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179400-103221000	Weak transcription	K562	blood
2	chr4:103181600-103210800	Weak transcription	Liver	Liver
3	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:103183400-103210600	Weak transcription	Primary B cells from cord blood	blood
6	chr4:103184200-103220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:103186600-103229600	Weak transcription	Pancreas	Pancrea
8	chr4:103186800-103216800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:103187200-103229400	Weak transcription	Fetal Thymus	thymus
10	chr4:103189000-103216800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:103189200-103211200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:103189200-103225400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:103189400-103218600	Weak transcription	Placenta	Placenta
14	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:103199400-103221000	Weak transcription	Ovary	ovary
17	chr4:103200800-103210400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:103200800-103217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:103201000-103220000	Weak transcription	GM12878-XiMat	blood
20	chr4:103201400-103210000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:103201400-103210800	Weak transcription	Dnd41	blood
22	chr4:103203600-103226400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:103203800-103211000	Weak transcription	Hela-S3	cervix
24	chr4:103204000-103228400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:103206200-103210000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:103207600-103221200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:103208200-103220600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:103209600-103211200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr4:103209800-103210200	Strong transcription	Primary T cells from cord blood	blood
30	chr4:103209800-103210800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr4:103209800-103213000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:103209800-103221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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