Variant report

Variant	rs7681437
Chromosome Location	chr4:103311274-103311275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103308466..103311400-chr4:103313181..103314983,2	MCF-7	breast:
2	chr4:103265258..103268006-chr4:103309617..103312569,2	K562	blood:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

rs_ID	r²[population]
rs10020497	1.00[CEU][hapmap]
rs10020659	1.00[CEU][hapmap]
rs1045155	1.00[CEU][hapmap]
rs13434535	1.00[CEU][hapmap]
rs58968531	1.00[EUR][1000 genomes]
rs61691473	1.00[EUR][1000 genomes]
rs6834896	1.00[EUR][1000 genomes]
rs6836807	1.00[CEU][hapmap]
rs6856035	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6857950	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926293	1.00[EUR][1000 genomes]
rs72926754	1.00[EUR][1000 genomes]
rs72928318	1.00[EUR][1000 genomes]
rs7654435	1.00[CEU][hapmap]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103308000-103312800	Weak transcription	Placenta	Placenta
2	chr4:103308800-103312400	Enhancers	HMEC	breast
3	chr4:103309000-103312200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:103309000-103312400	Enhancers	NHEK	skin
5	chr4:103309200-103311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103309400-103317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:103310200-103311400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:103310200-103312000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:103310200-103313200	Weak transcription	Hela-S3	cervix
10	chr4:103311000-103311400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:103311000-103311600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr4:103311000-103311800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:103311000-103313000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr4:103311000-103315600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:103311200-103311400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:103311200-103311400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:103311200-103311400	Enhancers	NH-A	brain
18	chr4:103311200-103311400	Enhancers	Osteobl	bone
19	chr4:103311200-103311600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:103311200-103311600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:103311200-103312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:103311200-103312400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:103311200-103313000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr4:103311200-103314000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:103311200-103314000	Enhancers	HUES6 Cell Line	embryonic stem cell

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