Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11100236	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11100243	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11732099	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12640732	0.87[EUR][1000 genomes]
rs12645160	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12646752	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12648292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1393576	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17239575	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28453123	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55650126	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55993310	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56032650	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56234927	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60517538	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62339597	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6826002	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6853778	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7692467	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7693162	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs961786	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160479600-160506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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