Variant report

Variant	rs1393576
Chromosome Location	chr4:160488212-160488213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10003094	0.92[ASN][1000 genomes]
rs10018111	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10034767	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10440449	0.82[AMR][1000 genomes]
rs11100236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11100243	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11732099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12640732	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12645160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646752	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12648292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393575	0.80[EUR][1000 genomes]
rs1502722	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1502723	0.80[EUR][1000 genomes]
rs1502744	0.92[ASN][1000 genomes]
rs17239575	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1893953	0.81[AMR][1000 genomes]
rs2088984	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28453123	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4317159	0.81[AMR][1000 genomes]
rs4339163	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4340759	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4473617	0.87[ASN][1000 genomes]
rs4493488	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55650126	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886018	0.92[ASN][1000 genomes]
rs55993310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56032650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56234927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60517538	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62337276	0.92[ASN][1000 genomes]
rs62339593	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62339597	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536442	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6817628	0.81[EUR][1000 genomes]
rs6826002	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839759	0.83[AMR][1000 genomes]
rs6840564	0.83[AMR][1000 genomes]
rs6853778	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856295	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7654634	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7692467	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7693162	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs961786	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs998887	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1007948	chr4:160484245-160492870	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1393576	FNIP2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160479600-160506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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