Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160504532..160506427-chr4:160510879..160513741,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10003094	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021309	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11100236	0.89[ASN][1000 genomes]
rs11100242	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11732099	0.86[ASN][1000 genomes]
rs12645160	0.92[ASN][1000 genomes]
rs12646752	0.94[ASN][1000 genomes]
rs12648292	0.92[ASN][1000 genomes]
rs1393576	0.92[ASN][1000 genomes]
rs1502722	0.93[ASN][1000 genomes]
rs1502744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17239575	0.82[ASN][1000 genomes]
rs2221312	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28453123	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4473617	0.82[ASN][1000 genomes]
rs55650126	0.92[ASN][1000 genomes]
rs55886018	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55993310	0.92[ASN][1000 genomes]
rs56032650	0.92[ASN][1000 genomes]
rs56234927	0.92[ASN][1000 genomes]
rs60517538	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62339593	0.89[ASN][1000 genomes]
rs62339597	0.92[ASN][1000 genomes]
rs6826002	0.93[ASN][1000 genomes]
rs6853778	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692467	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693162	0.82[ASN][1000 genomes]
rs961786	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160509200-160514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160510400-160513400	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search: