Variant report

Variant	rs2221312
Chromosome Location	chr4:160508403-160508404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10003094	0.81[EUR][1000 genomes]
rs10018111	0.96[ASN][1000 genomes]
rs10021309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034767	0.96[ASN][1000 genomes]
rs10440449	0.96[ASN][1000 genomes]
rs11100238	0.94[ASN][1000 genomes]
rs11100242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726625	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12186282	0.81[ASN][1000 genomes]
rs12506701	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13146333	0.81[ASN][1000 genomes]
rs1393575	0.97[ASN][1000 genomes]
rs1502723	0.96[ASN][1000 genomes]
rs1502744	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1893953	0.97[ASN][1000 genomes]
rs2088984	0.96[ASN][1000 genomes]
rs2102181	0.82[ASN][1000 genomes]
rs2134422	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4317159	0.95[ASN][1000 genomes]
rs4339163	0.96[ASN][1000 genomes]
rs4340759	0.95[ASN][1000 genomes]
rs4493488	0.96[ASN][1000 genomes]
rs4691576	0.96[ASN][1000 genomes]
rs4691577	0.87[ASN][1000 genomes]
rs55886018	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62337276	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6536442	0.96[ASN][1000 genomes]
rs6817628	0.97[ASN][1000 genomes]
rs6839557	0.95[ASN][1000 genomes]
rs6839759	0.95[ASN][1000 genomes]
rs6839982	0.86[ASN][1000 genomes]
rs6840564	0.95[ASN][1000 genomes]
rs6848958	0.81[ASN][1000 genomes]
rs6851325	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6856295	0.96[ASN][1000 genomes]
rs6858329	0.81[ASN][1000 genomes]
rs71609049	0.81[ASN][1000 genomes]
rs9307991	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs998887	0.97[ASN][1000 genomes]
rs9992703	0.87[ASN][1000 genomes]
rs9995801	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160506800-160508600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160506800-160509200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:160507000-160508800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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