Variant report

Variant	rs6858329
Chromosome Location	chr4:160512123-160512124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160504532..160506427-chr4:160510879..160513741,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10021309	0.81[ASN][1000 genomes]
rs11100237	0.95[ASN][1000 genomes]
rs11100242	0.81[ASN][1000 genomes]
rs11726625	0.82[EUR][1000 genomes]
rs12186282	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506701	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393583	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1502726	0.97[ASN][1000 genomes]
rs1566700	0.97[ASN][1000 genomes]
rs1604582	0.97[ASN][1000 genomes]
rs1604583	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1827465	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1893952	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2102181	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2134422	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174060	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2221312	0.81[ASN][1000 genomes]
rs2348412	0.97[ASN][1000 genomes]
rs2348413	0.97[ASN][1000 genomes]
rs2348414	0.97[ASN][1000 genomes]
rs28589990	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2881908	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34436280	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4264787	0.97[ASN][1000 genomes]
rs4607168	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4691577	0.86[ASN][1000 genomes]
rs6536441	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67023307	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6823356	0.97[ASN][1000 genomes]
rs6835551	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848958	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850521	0.97[ASN][1000 genomes]
rs6851325	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71609049	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307991	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961787	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs998885	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs998886	0.97[ASN][1000 genomes]
rs9992703	0.86[ASN][1000 genomes]
rs9995801	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160509200-160514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160510400-160513400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:160511800-160512200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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