Variant report

Variant	rs1393583
Chromosome Location	chr4:160516654-160516655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11100243	0.88[ASN][1000 genomes]
rs12186282	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13146333	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17239575	0.90[ASN][1000 genomes]
rs1827465	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000885	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000886	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2062765	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174060	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2881908	0.81[EUR][1000 genomes]
rs6848958	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6858329	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71609049	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7693162	0.90[ASN][1000 genomes]
rs961786	0.90[ASN][1000 genomes]
rs961787	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160513400-160517200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:160513400-160517400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:160513600-160516800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:160513600-160517400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:160513600-160517600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:160513800-160517000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:160514200-160517400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:160514600-160517000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:160515600-160516800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:160516000-160519200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:160516000-160519400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:160516200-160526800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:160516400-160516800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr4:160516600-160516800	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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