Variant report

Variant	rs2174060
Chromosome Location	chr4:160510399-160510400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11100237	0.87[ASN][1000 genomes]
rs11726625	0.82[EUR][1000 genomes]
rs12186282	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12506701	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13146333	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393583	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1502726	0.89[ASN][1000 genomes]
rs1566700	0.89[ASN][1000 genomes]
rs1604582	0.89[ASN][1000 genomes]
rs1604583	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1827465	0.81[AMR][1000 genomes]
rs1893952	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2102181	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2134422	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2348412	0.89[ASN][1000 genomes]
rs2348413	0.89[ASN][1000 genomes]
rs2348414	0.89[ASN][1000 genomes]
rs28589990	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2881908	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34436280	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4264787	0.89[ASN][1000 genomes]
rs4607168	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6536441	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67023307	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6823356	0.89[ASN][1000 genomes]
rs6835551	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6848958	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6850521	0.89[ASN][1000 genomes]
rs6851325	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6858329	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71609049	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9307991	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs961787	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs998885	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs998886	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160509200-160514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160510200-160510400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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