Variant report

Variant	rs2102181
Chromosome Location	chr4:160490480-160490481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10018111	0.85[ASN][1000 genomes]
rs10021309	0.82[ASN][1000 genomes]
rs10034767	0.85[ASN][1000 genomes]
rs10440449	0.85[ASN][1000 genomes]
rs11100237	0.82[ASN][1000 genomes]
rs11100238	0.83[ASN][1000 genomes]
rs11100242	0.82[ASN][1000 genomes]
rs11726625	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12186282	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12506701	0.80[ASN][1000 genomes]
rs13146333	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1393575	0.84[ASN][1000 genomes]
rs1502723	0.83[ASN][1000 genomes]
rs1502726	0.83[ASN][1000 genomes]
rs1566700	0.83[ASN][1000 genomes]
rs1604582	0.83[ASN][1000 genomes]
rs1604583	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1893952	0.81[AMR][1000 genomes]
rs1893953	0.84[ASN][1000 genomes]
rs2088984	0.85[ASN][1000 genomes]
rs2134422	0.80[ASN][1000 genomes]
rs2174060	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2221312	0.82[ASN][1000 genomes]
rs2348412	0.83[ASN][1000 genomes]
rs2348413	0.83[ASN][1000 genomes]
rs2348414	0.83[ASN][1000 genomes]
rs2881908	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34436280	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4264787	0.83[ASN][1000 genomes]
rs4317159	0.82[ASN][1000 genomes]
rs4339163	0.85[ASN][1000 genomes]
rs4340759	0.84[ASN][1000 genomes]
rs4493488	0.85[ASN][1000 genomes]
rs4607168	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4691576	0.85[ASN][1000 genomes]
rs4691577	0.94[ASN][1000 genomes]
rs6536442	0.85[ASN][1000 genomes]
rs67023307	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6817628	0.84[ASN][1000 genomes]
rs6823356	0.83[ASN][1000 genomes]
rs6835551	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6839557	0.82[ASN][1000 genomes]
rs6839759	0.82[ASN][1000 genomes]
rs6840564	0.82[ASN][1000 genomes]
rs6848958	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6850521	0.83[ASN][1000 genomes]
rs6851325	0.80[ASN][1000 genomes]
rs6856295	0.85[ASN][1000 genomes]
rs6858329	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71609049	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9307991	0.80[ASN][1000 genomes]
rs998885	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs998886	0.83[ASN][1000 genomes]
rs998887	0.84[ASN][1000 genomes]
rs9992703	0.94[ASN][1000 genomes]
rs9995801	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1007948	chr4:160484245-160492870	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160479600-160506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links