Variant report

Variant	rs10018111
Chromosome Location	chr4:160489255-160489256
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10021309	0.96[ASN][1000 genomes]
rs10034767	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10440449	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100236	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11100237	0.81[EUR][1000 genomes]
rs11100238	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100242	0.96[ASN][1000 genomes]
rs11726625	0.99[ASN][1000 genomes]
rs11732099	0.83[AMR][1000 genomes]
rs12645160	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12646752	0.80[AMR][1000 genomes]
rs12648292	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1393575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1393576	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1502723	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566700	0.81[EUR][1000 genomes]
rs1604582	0.81[ASN][1000 genomes]
rs1604583	0.81[ASN][1000 genomes]
rs1893953	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2088984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102181	0.85[ASN][1000 genomes]
rs2221312	0.96[ASN][1000 genomes]
rs2348412	0.83[EUR][1000 genomes]
rs28453123	0.81[EUR][1000 genomes]
rs4264787	0.81[ASN][1000 genomes]
rs4317159	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4339163	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340759	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4493488	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607168	0.81[ASN][1000 genomes]
rs4691576	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691577	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55650126	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55993310	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56032650	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56234927	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60517538	0.80[EUR][1000 genomes]
rs62339597	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6536442	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817628	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839557	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6839759	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6839982	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6840564	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6850521	0.81[ASN][1000 genomes]
rs6853778	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6856295	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692467	0.81[EUR][1000 genomes]
rs998886	0.83[EUR][1000 genomes]
rs998887	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9992703	0.90[ASN][1000 genomes]
rs9995801	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1007948	chr4:160484245-160492870	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160479600-160506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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